STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0008KEGG: sma:SAV_4323 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Caci_0202
PFAM: Septum formation initiator; KEGG: sma:SAV_3532 hypothetical protein.
  
     0.761
Caci_0005
PFAM: protein of unknown function DUF721; KEGG: sgr:SGR_3704 hypothetical protein.
 
     0.759
Caci_1473
KEGG: sco:SCO2947 hypothetical protein.
  
     0.754
whiB-7
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.752
Caci_3014
PFAM: transcription factor WhiB; KEGG: sco:SCO5240 hypothetical protein.
  
     0.748
Caci_8087
KEGG: sma:SAV_3902 hypothetical protein.
  
     0.742
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.738
Caci_1559
KEGG: sma:SAV_5801 hypothetical protein.
  
     0.728
Caci_7933
KEGG: sma:SAV_3061 hypothetical protein.
  
     0.727
Caci_3131
SMART: regulatory protein MerR; KEGG: mgi:Mflv_3399 MerR family transcriptional regulator.
  
     0.725
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.