STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0010PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: pfl:PFL_2127 putidacin L1. (140 aa)    
Predicted Functional Partners:
Caci_4648
PFAM: beta-lactamase domain protein; KEGG: sma:SAV_1217 metallo-beta-lactamase.
 
    0.620
Caci_0009
KEGG: rlt:Rleg2_4895 hypothetical protein.
       0.492
Caci_6701
Conserved hypothetical protein; KEGG: sus:Acid_2379 TPR repeat-containing protein.
 
     0.443
Caci_0011
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: saq:Sare_0152 GntR family transcriptional regulator.
       0.431
Caci_8936
KEGG: mgi:Mflv_1133 hypothetical protein.
  
     0.410
Caci_8730
KEGG: sco:SCO2221 hypothetical protein.
  
     0.409
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.