STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0029PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: mjl:Mjls_3025 lysine exporter protein LysE/YggA. (214 aa)    
Predicted Functional Partners:
Caci_7985
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: sma:SAV_3763 LysE family efflux protein.
  
     0.774
Caci_0028
PFAM: GCN5-related N-acetyltransferase; KEGG: rle:RL2084 putative acetyltransferase.
  
    0.743
Caci_0030
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor.
       0.533
Caci_0031
KEGG: sgr:SGR_5473 putative integral membrane protein.
       0.533
Caci_0032
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rpc:RPC_2940 methyltransferase type 11.
       0.481
Caci_5800
PFAM: protein of unknown function DUF6 transmembrane; KEGG: sen:SACE_1858 hypothetical protein.
 
   
 0.465
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.