STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0126PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_0159 type I phosphodiesterase / nucleotide pyrophosphatase family protein. (279 aa)    
Predicted Functional Partners:
Caci_0127
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: sma:SAV_2089 2-hydroxyacid dehydrogenase.
       0.655
Caci_0124
Hypothetical protein.
       0.580
Caci_0125
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: fre:Franean1_0089 ECF subfamily RNA polymerase sigma-24 factor.
       0.580
Caci_0133
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sma:SAV_5310 hypothetical protein.
 
   
 0.543
Caci_6219
TIGRFAM: FAD dependent oxidoreductase TIGR03364; PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: rha:RHA1_ro03606 oxidoreductase.
 
     0.541
Caci_0176
PFAM: protein of unknown function DUF1330; KEGG: mlo:mll3541 hypothetical protein.
  
     0.495
Caci_4710
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: sen:SACE_3156 large transcriptional regulator.
  
     0.495
Caci_6303
KEGG: sco:SCO5949 hypothetical protein.
  
     0.479
Caci_5029
KEGG: bfs:BF0474 hypothetical protein.
  
     0.459
Caci_0131
Hypothetical protein; KEGG: rlt:Rleg2_5337 heparinase II/III family protein.
 
     0.437
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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