STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0133PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sma:SAV_5310 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Caci_0132
KEGG: sma:SAV_2106 hypothetical protein.
 
     0.842
Caci_0131
Hypothetical protein; KEGG: rlt:Rleg2_5337 heparinase II/III family protein.
  
    0.780
Caci_7903
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: aau:AAur_1457 oxidoreductase family protein.
 
  
 0.729
Caci_0130
PFAM: extracellular solute-binding protein family 1; KEGG: aau:AAur_1455 putative lipoprotein precursor LplA.
 
    0.699
Caci_4491
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: ace:Acel_1800 thiamine pyrophosphate binding domain-containing protein; Belongs to the TPP enzyme family.
  
  
 0.657
Caci_1724
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: kra:Krad_4057 myo-inositol catabolism IolB domain-containing protein.
  
  
 0.630
Caci_0129
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1454 putative transmembrane lipoprotein LplC.
  
    0.611
Caci_0128
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aau:AAur_1453 putative transmembrane lipoprotein LplB.
       0.592
Caci_0126
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: aau:AAur_0159 type I phosphodiesterase / nucleotide pyrophosphatase family protein.
 
   
 0.543
Caci_0140
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sgr:SGR_4813 putative oxidoreductase.
 
  
 0.541
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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