STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0202PFAM: Septum formation initiator; KEGG: sma:SAV_3532 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Caci_6105
Polypeptide-transport-associated domain protein FtsQ-type; Essential cell division protein.
 
 
 
 0.972
Caci_0008
KEGG: sma:SAV_4323 hypothetical protein.
  
     0.761
Caci_1858
KEGG: sgr:SGR_5340 putative integral membrane protein.
  
     0.753
Caci_1633
KEGG: ace:Acel_1404 hypothetical protein.
  
     0.747
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.740
Caci_7933
KEGG: sma:SAV_3061 hypothetical protein.
  
     0.740
Caci_6100
PFAM: protein of unknown function YGGT; KEGG: tfu:Tfu_1117 hypothetical protein.
 
   
 0.739
Caci_7073
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: sco:SCO2564 DNA-binding protein.
 
     0.715
Caci_7408
KEGG: sma:SAV_6007 integral membrane protein.
  
     0.706
Caci_7361
TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: aau:AAur_2400 putative single-strand binding protein (ssb) (helix-destabilizing protein).
 
     0.698
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.