STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0223Hypothetical protein. (619 aa)    
Predicted Functional Partners:
Caci_0224
Hypothetical protein.
       0.773
Caci_7799
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: sma:SAV_3072 ATP-dependent DNA helicase.
  
 
 0.727
Caci_0299
PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: saq:Sare_0168 Glu/Leu/Phe/Val dehydrogenase dimerisation region; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.682
Caci_4348
PFAM: Glu/Leu/Phe/Val dehydrogenase dimerisation region; Glu/Leu/Phe/Val dehydrogenase; KEGG: bxe:Bxe_A2689 putative Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 0.682
Caci_0312
Hypothetical protein; KEGG: cbt:CLH_2449 TfoX C-domain superfamily.
   
   0.612
Caci_6197
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.610
Caci_0222
Hypothetical protein; KEGG: cms:CMS_1496 large integral membrane protein.
       0.579
Caci_0226
KEGG: hau:Haur_5148 hypothetical protein.
   
   0.567
Caci_0225
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; NB-ARC domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: sen:SACE_0488 SARP family transcriptional regulator.
  
    0.554
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 
 0.463
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.