STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (556 aa)    
Predicted Functional Partners:
hutI
KEGG: saq:Sare_0997 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.
 
 0.999
hutH
KEGG: sma:SAV_3325 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
 0.999
Caci_0251
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: sma:SAV_3494 N-formimino-L-glutamate deiminase.
 
  
 0.948
Caci_0252
KEGG: sgr:SGR_4463 M20/M25/M40 family peptidase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
 
     0.852
Caci_3671
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rha:RHA1_ro04297 dipeptidase.
  
  
 0.849
Caci_8153
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: msm:MSMEG_4459 agmatinase; Belongs to the arginase family.
  
  
 0.473
Caci_8299
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: rsa:RSal33209_3378 arginase; Belongs to the arginase family.
  
  
 0.473
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
    0.432
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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