STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0276PFAM: isochorismatase hydrolase; KEGG: sco:SCO0748 hydrolase. (204 aa)    
Predicted Functional Partners:
Caci_0278
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bmj:BMULJ_04209 MarR family transcriptional regulator.
 
     0.838
Caci_0277
PFAM: major facilitator superfamily MFS_1; KEGG: mbn:Mboo_0388 major facilitator transporter.
     0.817
Caci_5128
PFAM: isochorismatase hydrolase; KEGG: mlo:mlr4509 hypothetical protein.
  
     0.768
Caci_0812
PFAM: isochorismatase hydrolase; KEGG: art:Arth_0076 isochorismatase hydrolase.
  
     0.662
Caci_4467
PFAM: isochorismatase hydrolase; KEGG: mxa:MXAN_3644 isochorismatase.
  
   
 0.606
Caci_4541
PFAM: isochorismatase hydrolase; KEGG: sco:SCO7455 isochorismatase.
  
     0.557
purD
KEGG: sma:SAV_4149 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.
       0.543
Caci_3481
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.433
Caci_7483
PFAM: phosphoesterase; KEGG: cjk:jk0010 putative acid phosphatase.
  
     0.406
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.