STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0293KEGG: sco:SCO2835 membrane protein. (316 aa)    
Predicted Functional Partners:
Caci_0294
KEGG: met:M446_6942 chromosome segregation protein SMC.
       0.773
Caci_0292
KEGG: lic:LIC12006 hypothetical protein.
       0.678
Caci_0295
KEGG: sma:SAV_4137 hypothetical protein.
 
     0.583
Caci_6743
SMART: phosphoesterase PHP domain protein; KEGG: sma:SAV_3795 secreted protein.
  
     0.547
Caci_2521
PFAM: PHP domain protein; KEGG: sma:SAV_3795 secreted protein.
  
     0.505
Caci_4087
PFAM: putative RNA methylase; KEGG: sen:SACE_2307 hypothetical protein; Belongs to the N(4)/N(6)-methyltransferase family.
  
     0.471
Caci_4297
PFAM: periplasmic binding protein; KEGG: saq:Sare_2741 periplasmic binding protein.
  
     0.465
Caci_5681
PFAM: aminoglycoside phosphotransferase; KEGG: sma:SAV_6001 hypothetical protein.
  
     0.453
Caci_8946
KEGG: sgr:SGR_7062t hypothetical protein.
  
     0.452
Caci_8929
KEGG: sgr:SGR_7062t hypothetical protein.
 
     0.451
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.