STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0381PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sma:SAV_1467 dehydrogenase. (343 aa)    
Predicted Functional Partners:
Caci_7003
PFAM: short-chain dehydrogenase/reductase SDR; Beta- ketoacyl synthase; KR domain protein; Acyl transferase; Erythronolide synthase docking; phosphopantetheine- binding; NAD-dependent epimerase/dehydratase; KEGG: sma:SAV_418 modular polyketide synthase.
 
 
 0.636
Caci_0382
PFAM: protein of unknown function DUF1486; KEGG: ana:alr3729 unknown protein.
       0.628
Caci_7001
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: hau:Haur_3961 beta-ketoacyl synthase.
 
 
 0.555
Caci_0380
PFAM: regulatory protein TetR; KEGG: sgr:SGR_3047 TetR family transcriptional regulator.
       0.546
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.