STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0434KEGG: fra:Francci3_0876 putative ATP/GTP binding protein. (713 aa)    
Predicted Functional Partners:
Caci_3580
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: sgr:SGR_385 hypothetical protein.
 
     0.652
Caci_5898
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: hypothetical protein.
  
 0.615
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.603
Caci_3829
PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: fal:FRAAL1754 hypothetical protein.
 
 0.589
Caci_3830
PFAM: WD-40 repeat protein; peptidase C14 caspase catalytic subunit p20; SMART: WD-40 repeat protein; KEGG: fre:Franean1_1125 WD-40 repeat-containing serine/threonin protein kinase.
  
 0.587
Caci_3742
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: gvi:gll2764 unknown protein.
 
     0.585
Caci_0433
KEGG: gvi:gll3649 hypothetical protein.
       0.580
Caci_6918
Transcriptional regulator, XRE family; PFAM: WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: fra:Francci3_4184 hypothetical protein.
  
 0.574
Caci_0493
Hypothetical protein; KEGG: fre:Franean1_5724 ATP/GTP-binding protein.
     0.573
Caci_3925
PFAM: WD40 domain protein beta Propeller; KEGG: hypothetical protein.
  
     0.565
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.