STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0478PFAM: glycosyl transferase family 2; KEGG: bsu:BSU07300 hypothetical protein. (335 aa)    
Predicted Functional Partners:
Caci_0479
PFAM: cytochrome P450; KEGG: amr:AM1_E0096 cytochrome P450 family protein, putative.
   
   0.631
Caci_0481
PFAM: Glycosyltransferase 28 domain; KEGG: lxx:Lxx06832 glycosyltransferase.
 
   
 0.562
Caci_8502
KEGG: fra:Francci3_3854 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.540
Caci_0480
KEGG: sgr:SGR_588 hypothetical protein.
  
   0.529
Caci_8495
PFAM: glycosyl transferase family 2; KEGG: smd:Smed_4802 glycosyl transferase family 2.
 
     0.527
Caci_3245
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; KEGG: fre:Franean1_1674 NAD-dependent epimerase/dehydratase.
 
   0.460
Caci_1465
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: cjk:jk1098 hypothetical protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.454
Caci_4023
PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; KEGG: sen:SACE_1537 UDP-glucose 4-epimerase.
 
  
 0.450
Caci_8174
TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: sgr:SGR_4945 putative UDP-glucose 4-epimerase.
 
  
 0.447
Caci_8193
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: cmi:CMM_1010 putative dTDP-glucose 4,6- dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.446
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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