STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0489KEGG: fra:Francci3_1084 hypothetical protein. (540 aa)    
Predicted Functional Partners:
Caci_0487
KEGG: fra:Francci3_1082 hypothetical protein.
 
   
 0.952
Caci_0486
KEGG: fra:Francci3_1081 hypothetical protein.
 
     0.951
Caci_0488
KEGG: fra:Francci3_1083 hypothetical protein.
 
     0.951
Caci_5499
KEGG: scl:sce2124 hypothetical protein.
     0.793
Caci_5500
KEGG: nfa:nfa31990 hypothetical protein.
 
   
 0.773
Caci_4898
KEGG: pat:Patl_1116 hypothetical protein.
  
     0.560
Caci_5501
KEGG: rha:RHA1_ro00874 hypothetical protein.
 
     0.555
Caci_8415
PFAM: zinc finger SWIM domain protein; KEGG: sma:SAV_457 hypothetical protein.
 
     0.525
Caci_6701
Conserved hypothetical protein; KEGG: sus:Acid_2379 TPR repeat-containing protein.
  
     0.514
Caci_4586
KEGG: sgr:SGR_6765 hypothetical protein.
  
     0.495
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.