STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0497PFAM: protein of unknown function DUF955; SMART: Appr-1-p processing domain protein; KEGG: sus:Acid_6274 hypothetical protein. (475 aa)    
Predicted Functional Partners:
Caci_3581
PFAM: Glycoside hydrolase family 59; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein; K01202 galactosylceramidase.
  
     0.703
Caci_7107
Galactosylceramidase; KEGG: hypothetical protein; K01202 galactosylceramidase; PFAM: Glycoside hydrolase family 59; Ricin B lectin; SMART: Ricin B lectin.
  
     0.701
Caci_4910
PFAM: Glycoside hydrolase family 59; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein; K01202 galactosylceramidase.
  
     0.677
purA-2
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
 
     0.669
Caci_0499
KEGG: sus:Acid_6276 hypothetical protein.
       0.614
Caci_0496
PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: sma:SAV_2480 hypothetical protein.
       0.590
Caci_5310
KEGG: mjl:Mjls_2065 translation initiation factor IF-2.
  
     0.587
Caci_4106
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: amr:AM1_1657 hypothetical protein.
  
     0.532
Caci_7009
PFAM: Thioesterase; KEGG: hau:Haur_3974 oleoyl-(acyl-carrier-protein) hydrolase.
  
     0.509
Caci_3448
PFAM: Thioesterase; KEGG: hau:Haur_1885 oleoyl-(acyl-carrier-protein) hydrolase.
  
     0.483
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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