STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0588PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: sma:SAV_3588 hypothetical protein. (375 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.964
Caci_0587
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: sma:SAV_3589 deoxyribonuclease.
 
   
 0.841
ispE
4-diphosphocytidyl-2C-methyl-D-erythritolkinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.811
Caci_0730
KEGG: sma:SAV_3235 hypothetical protein.
    
 0.778
Caci_1667
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: sma:SAV_6047 cytochrome c oxidase subunit II.
      
 0.574
Caci_7617
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II-like protein; KEGG: sgr:SGR_4495 hypothetical protein.
  
     0.562
Caci_6766
PFAM: NLP/P60 protein; KEGG: sgr:SGR_2736 NLP/P60 family secreted protein.
  
  
 0.548
Caci_0042
PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_3719 hypothetical protein.
  
     0.546
Caci_3123
PFAM: protein of unknown function DUF881; KEGG: sma:SAV_6978 hypothetical protein.
  
     0.536
Caci_3126
PFAM: protein of unknown function DUF881; KEGG: sgr:SGR_6144 hypothetical protein.
  
     0.534
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.