STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0656KEGG: sco:SCO4226 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Caci_2060
PFAM: copper resistance D domain protein; KEGG: cak:Caul_2346 copper resistance D domain- containing protein.
  
     0.546
Caci_6212
PFAM: Cupin 2 conserved barrel domain protein; KEGG: nfa:nfa32740 hypothetical protein.
  
     0.540
Caci_0655
Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein.
       0.527
Caci_0657
Hypothetical protein.
       0.521
Caci_0658
Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_2579 putative cystathionine gamma- synthase.
       0.521
Caci_1190
KEGG: cmi:CMM_0528 putative metal-dependent hydrolase.
  
     0.479
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.