STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0658Cystathionine gamma-synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_2579 putative cystathionine gamma- synthase. (387 aa)    
Predicted Functional Partners:
Caci_0644
KEGG: sma:SAV_3510 cystathionine beta-synthase; TIGRFAM: cystathionine beta-synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; CBS domain containing protein; SMART: CBS domain containing protein.
 0.996
Caci_5363
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.980
Caci_8729
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fal:FRAAL3176 putative lyase (cysteine synthase/cystathionine beta-synthase family protein).
 
 0.968
Caci_4334
PFAM: Methionine synthase vitamin-B12 independent; KEGG: sgr:SGR_5029 putative 5- methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase.
  
 
 0.962
Caci_6332
PFAM: aminotransferase class I and II; KEGG: sen:SACE_3049 aminotransferase.
 
 
 0.956
metXA
Homoserine O-acetyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine.
  
 0.952
Caci_7370
Sulfite reductase (ferredoxin); PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: sco:SCO6102 nitrite/sulphite reductase.
  
 0.952
Caci_3432
PFAM: alpha/beta hydrolase fold protein; KEGG: mjl:Mjls_0026 hypothetical protein; Belongs to the AB hydrolase superfamily. MetX family.
 
  
 0.943
Caci_5020
PFAM: molybdopterin oxidoreductase; flavodoxin/nitric oxide synthase; molybdopterin oxidoreductase Fe4S4 region; FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; molydopterin dinucleotide-binding region; KEGG: sgr:SGR_6233 putative assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.937
Caci_7786
TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: tfu:Tfu_0616 branched-chain amino acid aminotransferase.
  
 0.935
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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