STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0681PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fre:Franean1_1654 ABC transporter related. (283 aa)    
Predicted Functional Partners:
Caci_0680
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein.
 
 
 0.985
Caci_8341
PFAM: protein of unknown function DUF214; KEGG: saq:Sare_0412 hypothetical protein.
 
 0.963
Caci_0210
PFAM: protein of unknown function DUF214; KEGG: saq:Sare_0223 hypothetical protein.
 
 0.958
Caci_7809
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein.
 
 
 0.732
Caci_1028
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_0086 hypothetical protein.
 
 0.693
Caci_1613
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein.
 
 
 0.669
Caci_6966
PFAM: protein of unknown function DUF214; KEGG: fre:Franean1_1655 hypothetical protein.
 
  
 0.581
Caci_7898
PFAM: protein of unknown function DUF214; KEGG: sma:SAV_3550 ABC transporter integral membrane protein.
 
 
 0.574
Caci_8289
PFAM: protein of unknown function DUF214; KEGG: sco:SCO1031 ABC transport system integral membrane protein.
 
 
 0.552
Caci_0682
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: fre:Franean1_1653 histidine kinase.
  
    0.546
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.