STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0739PFAM: protein of unknown function DUF47; KEGG: sgr:SGR_3928 putative Pit accessory protein. (210 aa)    
Predicted Functional Partners:
Caci_0740
PFAM: phosphate transporter; KEGG: sma:SAV_4076 low-affinity inorganic phosphate transporter.
 
  
 0.989
Caci_5449
PFAM: phosphate transporter; KEGG: fal:FRAAL1465 putative low-affinity inorganic phosphate transporter.
 
  
 0.954
Caci_9055
Ribonuclease P protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.530
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
    0.501
Caci_5191
PFAM: protein of unknown function DUF156; KEGG: nfa:nfa8420 hypothetical protein.
     
 0.455
Caci_5780
PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: stp:Strop_1410 hypothetical protein.
 
     0.440
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: kra:Krad_1367 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.421
rpmB-2
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: sco:SCO5564 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.421
Caci_8024
TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: sgr:SGR_1913 putative RNA methylase.
  
  
 0.407
Caci_0738
Hypothetical protein.
       0.400
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.