STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0865PFAM: protein of unknown function DUF218; KEGG: sen:SACE_4407 hypothetical protein. (350 aa)    
Predicted Functional Partners:
Caci_0866
PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: art:Arth_3970 DNA polymerase III, epsilon subunit.
  
    0.705
Caci_0864
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: sgr:SGR_6626 putative zinc-binding dehydrogenase.
       0.572
Caci_0863
PFAM: aminoglycoside phosphotransferase; fructosamine kinase; KEGG: stp:Strop_4190 aminoglycoside phosphotransferase.
  
    0.533
Caci_0867
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: fal:FRAAL5492 thiol:disulfide interchange protein.
       0.478
Caci_0868
PFAM: regulatory protein TetR; KEGG: fre:Franean1_5699 TetR family transcriptional regulator.
 
     0.461
Caci_0862
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; SCP-like extracellular; KEGG: sgr:SGR_313 RNA polymerase ECF-subfamily sigma factor.
       0.403
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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