STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0889PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_1707 binding-protein-dependent transport systems inner membrane component. (302 aa)    
Predicted Functional Partners:
Caci_3206
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.957
Caci_8165
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sma:SAV_3962 ABC transporter ATP-binding protein.
 
 0.957
Caci_6970
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component.
  0.956
Caci_3093
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: art:Arth_0750 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.948
Caci_2784
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hau:Haur_1244 binding-protein-dependent transport systems inner membrane component.
  0.944
Caci_3588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cmi:CMM_0297 putative sugar ABC transporter, permease component.
 0.944
Caci_0890
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: art:Arth_1706 binding-protein-dependent transport systems inner membrane component.
 
   0.941
Caci_2154
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ace:Acel_0558 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.940
Caci_1719
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA0975 sugar ABC transporter, ATP- binding protein.
 
 0.916
Caci_4319
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dge:Dgeo_2918 ABC-type sugar transport system, permease component.
0.897
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.