STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_0898KEGG: stp:Strop_3941 hypothetical protein; Belongs to the UPF0336 family. (165 aa)    
Predicted Functional Partners:
Caci_0899
PFAM: MaoC domain protein dehydratase; KEGG: sco:SCO4637 hypothetical protein.
 
 0.999
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.663
Caci_6808
Putative transcriptional regulator, PucR family; KEGG: sma:SAV_5789 hypothetical protein.
  
     0.653
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: sgr:SGR_2884 putative 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.652
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   
 0.563
Caci_6809
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nca:Noca_1990 (acyl-carrier-protein) S- malonyltransferase.
  
   
 0.552
Caci_7951
KEGG: sgr:SGR_2387 hypothetical protein.
  
     0.550
Caci_3481
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.531
Caci_3637
PFAM: Catalase domain protein; KEGG: sma:SAV_2026 catalase; Belongs to the catalase family.
   
 0.528
Caci_6776
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: sma:SAV_2234 fatty acid oxidation complex alpha-subunit.
 
 0.508
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.