STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1064PFAM: GAF domain protein; KEGG: sma:SAV_1629 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Caci_1063
PFAM: protein of unknown function ATP binding; KEGG: sgr:SGR_6129 putative ATP/GTP-binding protein.
       0.773
Caci_1062
PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein.
 
   
 0.753
Caci_1060
PFAM: ATP-binding region ATPase domain protein; KEGG: sma:SAV_1633 sensor-like histidine kinase.
 
   
 0.743
Caci_1061
PFAM: Roadblock/LC7 family protein; KEGG: sgr:SGR_934 hypothetical protein.
     
 0.715
Caci_4117
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
 
 
 0.704
Caci_3328
GAF sensor hybrid histidine kinase; KEGG: sma:SAV_1085 two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
 
 
 
 0.572
Caci_8688
PFAM: OsmC family protein; KEGG: sgr:SGR_6917 hypothetical protein.
  
    0.462
Caci_0144
GAF sensor hybrid histidine kinase; KEGG: sgr:SGR_1773 putative two-component system sensor kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein.
 
 
 
 0.418
Caci_3634
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; metal-dependent phosphohydrolase HD sub domain; SMART: regulatory protein LuxR; metal-dependent phosphohydrolase HD region; KEGG: mva:Mvan_2058 metal dependent phosphohydrolase.
  
 
 0.410
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.