Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Caci_1069PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_4760 transmembrane efflux protein. (476 aa)    
Predicted Functional Partners:
Caci_6654
PFAM: major facilitator superfamily MFS_1; KEGG: mpa:MAP1632c hypothetical protein.
  
     0.726
Caci_7238
PFAM: major facilitator superfamily MFS_1; KEGG: mbn:Mboo_0388 major facilitator transporter.
  
     0.671
Caci_1068
PFAM: bifunctional deaminase-reductase domain protein; KEGG: saq:Sare_3935 deaminase-reductase domain- containing protein.
       0.520
Caci_3297
PFAM: major facilitator superfamily MFS_1; KEGG: rrs:RoseRS_3797 major facilitator transporter.
  
     0.456
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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