STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1120PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: sco:SCO6529 ATP/GTP binding protein. (354 aa)    
Predicted Functional Partners:
Caci_1121
KEGG: sco:SCO6530 hypothetical protein.
 
    0.907
Caci_8669
KEGG: stp:Strop_2867 hypothetical protein.
 
    0.712
Caci_7202
PFAM: type 3a cellulose-binding domain protein; KEGG: sco:SCO0535 hydrolase (secreted protein).
 
    0.673
Caci_1184
PFAM: zinc finger SWIM domain protein; KEGG: sco:SCO1291 hypothetical protein.
  
     0.565
Caci_1119
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: ace:Acel_1406 peptidase S9 prolyl oligopeptidase.
       0.550
Caci_6477
KEGG: fal:FRAAL4738 LuxR family transcriptional regulator.
  
    0.540
Caci_3987
SMART: Tetratricopeptide domain protein; KEGG: fre:Franean1_6801 TPR repeat-containing protein.
 
     0.465
Caci_1989
PFAM: protein of unknown function DUF1503; KEGG: sma:SAV_3579 hypothetical protein.
  
     0.464
Caci_8060
KEGG: hau:Haur_0847 hypothetical protein.
  
     0.462
Caci_4682
PFAM: extracellular solute-binding protein family 1; KEGG: kra:Krad_0409 extracellular solute-binding protein.
  
     0.446
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.