STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1156Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_4773 LysR family transcriptional regulator. (308 aa)    
Predicted Functional Partners:
Caci_1770
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO2734 LysR family transcriptional regulator.
  
     0.666
Caci_0540
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sen:SACE_1630 putative transcriptional regulator.
  
     0.655
Caci_1157
PFAM: ThiJ/PfpI domain protein; KEGG: sma:SAV_4772 DJ-1/PfpI family transcriptional regulator.
 
     0.633
Caci_4100
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sgr:SGR_1442 LysR family transcriptional regulator.
  
     0.633
Caci_7477
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: nfa:nfa29660 putative transcriptional regulator.
  
     0.627
Caci_6818
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bxe:Bxe_B0570 LysR family transcriptional regulator.
  
     0.623
Caci_5765
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sco:SCO4482 LysR family transcriptional regulator.
  
     0.618
Caci_0615
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO5914 transcriptional regulator.
  
     0.595
Caci_1447
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO3773 LysR family transcriptional regulator.
  
     0.587
Caci_6024
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sma:SAV_1626 LysR family transcriptional regulator.
  
     0.586
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.