STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1184PFAM: zinc finger SWIM domain protein; KEGG: sco:SCO1291 hypothetical protein. (475 aa)    
Predicted Functional Partners:
Caci_1185
KEGG: sco:SCO1292 secreted protein.
       0.832
Caci_4135
PFAM: WGR domain protein; SMART: WGR domain protein; KEGG: sco:SCO0563 hypothetical protein.
 
     0.691
Caci_3986
KEGG: sgr:SGR_649 hypothetical protein.
  
     0.648
Caci_1174
PFAM: Radical SAM domain protein; KEGG: sgr:SGR_953 hypothetical protein.
  
     0.647
Caci_1170
KEGG: sgr:SGR_949 hypothetical protein.
 
     0.637
Caci_1168
KEGG: sgr:SGR_948 hypothetical protein.
 
     0.631
Caci_1172
KEGG: sgr:SGR_951 hypothetical protein.
  
     0.626
Caci_5587
KEGG: sgr:SGR_948 hypothetical protein.
 
     0.622
Caci_5963
PFAM: Carboxymuconolactone decarboxylase; KEGG: sgr:SGR_476 hypothetical protein.
  
     0.622
Caci_1121
KEGG: sco:SCO6530 hypothetical protein.
  
     0.611
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.