STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1208KEGG: mkm:Mkms_5104 hypothetical protein. (641 aa)    
Predicted Functional Partners:
Caci_5665
PFAM: UbiA prenyltransferase; KEGG: cef:CE2712 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
  
 0.915
Caci_3490
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sco:SCO1047 integral membrane protein.
  
  
 0.867
Caci_1207
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: sgr:SGR_2174 hypothetical protein; Belongs to the SUA5 family.
       0.590
Caci_1209
PFAM: glycosyl transferase family 4; KEGG: sco:SCO5365 transferase.
  
  
 0.515
Caci_3135
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nfa:nfa31570 putative short chain dehydrogenase.
 
   
 0.485
Caci_2105
PFAM: UbiA prenyltransferase; KEGG: mgi:Mflv_3992 UbiA prenyltransferase.
  
  
 0.459
Caci_2464
KEGG: mle:ML1120 hypothetical protein.
  
     0.459
Caci_3521
KEGG: sma:SAV_6027 integral membrane protein.
  
     0.459
Caci_4968
PFAM: UbiA prenyltransferase; KEGG: cau:Caur_0843 UbiA prenyltransferase.
  
  
 0.459
Caci_8072
TIGRFAM: 4-hydroxybenzoate polyprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: fal:FRAAL1007 prenyltransferase; Belongs to the UbiA prenyltransferase family.
  
  
 0.459
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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