STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1225PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV_6972 membrane transport protein. (468 aa)    
Predicted Functional Partners:
Caci_3395
PFAM: coagulation factor 5/8 type domain protein; APHP domain protein; Fibronectin type III domain protein; SMART: coagulation factor 5/8 type domain protein; KEGG: sgr:SGR_6622 hypothetical protein.
  
     0.633
Caci_5033
PFAM: coagulation factor 5/8 type domain protein; KEGG: cma:Cmaq_0463 hypothetical protein.
  
     0.612
Caci_4137
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: saq:Sare_4678 ArsR family transcriptional regulator.
 
     0.611
Caci_1605
PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase.
  
     0.561
Caci_1270
PFAM: Ig family protein; KEGG: sma:SAV_5630 neutral zinc metalloprotease.
  
     0.552
Caci_7496
PFAM: glycoside hydrolase family 8; KEGG: hau:Haur_2431 licheninase.
  
     0.537
Caci_4337
PFAM: coagulation factor 5/8 type domain protein; Carbohydrate binding family 6; SMART: cellulose binding type IV; coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sgr:SGR_474 putative secreted protein.
  
     0.536
Caci_8435
Transcriptional regulator, MarR family; PFAM: regulatory protein ArsR; regulatory protein MarR; SMART: regulatory protein ArsR; KEGG: aau:AAur_0079 putative transcriptional regulator.
 
     0.532
Caci_1231
Hypothetical protein; KEGG: sco:SCP1.273c putative large secreted protein.
  
     0.529
Caci_4658
Mycodextranase; KEGG: sma:SAV_1723 mycodextranase.
  
     0.527
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.