STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1235KEGG: sma:SAV_2866 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Caci_0072
KEGG: sgr:SGR_3324 hypothetical protein.
 
     0.841
Caci_1234
PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein.
 
     0.602
Caci_1504
PFAM: protein of unknown function DUF397; KEGG: sco:SCO3424 regulator.
  
     0.597
Caci_1062
PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein.
  
     0.591
Caci_4182
PFAM: protein of unknown function DUF742; KEGG: nfa:nfa23530 hypothetical protein.
  
     0.588
Caci_1236
PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO5390 alkanal monooxygenase (luciferase).
  
     0.574
Caci_1736
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: sma:SAV_6568 ATPase.
  
     0.536
Caci_8449
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: sgr:SGR_3306 putative anti-sigma factor.
  
     0.533
Caci_2532
PFAM: protein of unknown function DUF742; KEGG: fra:Francci3_4332 hypothetical protein.
  
     0.531
Caci_8046
KEGG: stp:Strop_1263 hypothetical protein.
  
     0.508
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.