STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1236PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO5390 alkanal monooxygenase (luciferase). (323 aa)    
Predicted Functional Partners:
Caci_7422
PFAM: Luciferase-like monooxygenase; KEGG: rxy:Rxyl_0211 luciferase-like protein.
  
     0.581
Caci_1235
KEGG: sma:SAV_2866 hypothetical protein.
  
     0.574
Caci_1237
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_1784 3-hydroxyacyl-CoA dehydrogenase.
       0.525
Caci_0072
KEGG: sgr:SGR_3324 hypothetical protein.
 
     0.481
Caci_1269
PFAM: Luciferase-like monooxygenase; KEGG: msm:MSMEG_2307 hypothetical protein.
  
     0.461
Caci_8280
PFAM: Luciferase-like monooxygenase; KEGG: mab:MAB_4496c luciferase-like monooxygenase.
  
     0.434
Caci_8770
PFAM: Luciferase-like monooxygenase; KEGG: mjl:Mjls_3337 fis family transcriptional regulator.
  
     0.426
Caci_3091
KEGG: sgr:SGR_6834 putative nonspecific lipid- transfer protein.
  
   
 0.421
Caci_4303
PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: sma:SAV_1207 NAD(P)H-dependent FMN reductase.
 
   0.414
Caci_8767
KEGG: sgr:SGR_4231 hypothetical protein.
  
     0.408
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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