STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1327PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: cbe:Cbei_2675 coagulation factor 5/8 type domain protein. (732 aa)    
Predicted Functional Partners:
Caci_3687
PFAM: coagulation factor 5/8 type domain protein; Ig family protein; SMART: Dystroglycan-type cadherin domain protein; KEGG: saq:Sare_4887 coagulation factor 5/8 type domain-containing protein.
   
 0.882
Caci_1328
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: sma:SAV_5252 sugar hydrolase.
 
  
0.809
Caci_4312
PFAM: coagulation factor 5/8 type domain protein; glycoside hydrolase family 16; KEGG: sco:SCO6596 secreted protein.
   
 0.748
Caci_4225
PFAM: Carbohydrate-binding CenC domain protein; KEGG: sco:SCO2503 chitinase precursor; Belongs to the glycosyl hydrolase 18 family.
  
  
 0.710
Caci_3706
PFAM: coagulation factor 5/8 type domain protein; KEGG: sma:SAV_1723 mycodextranase.
 
     0.707
Caci_4658
Mycodextranase; KEGG: sma:SAV_1723 mycodextranase.
 
     0.707
Caci_3294
PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase.
 
     0.688
Caci_3707
PFAM: Carbohydrate binding family 6; KEGG: cpy:Cphy_1873 carbohydrate-binding family 6 protein.
 
     0.647
Caci_3604
PFAM: glycoside hydrolase family 48; Fibronectin type III domain protein; cellulose-binding family II; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: ace:Acel_0617 glycoside hydrolase family protein.
  
     0.637
Caci_1605
PFAM: coagulation factor 5/8 type domain protein; SMART: coagulation factor 5/8 type domain protein; Parallel beta-helix repeat; KEGG: sma:SAV_1723 mycodextranase.
 
     0.620
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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