STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1382Hypothetical protein; KEGG: spn:SP_1772 cell wall surface anchor family protein. (380 aa)    
Predicted Functional Partners:
Caci_1378
PFAM: 2-nitropropane dioxygenase NPD; KEGG: mav:MAV_0607 oxidoreductase, 2-nitropropane dioxygenase family protein.
       0.503
Caci_1379
PFAM: coenzyme A transferase; KEGG: saq:Sare_2805 coenzyme A transferase.
       0.503
Caci_1380
PFAM: coenzyme A transferase; KEGG: stp:Strop_2605 coenzyme A transferase.
       0.503
Caci_1381
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro04652 enoyl-CoA hydratase.
       0.503
Caci_1377
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO2876 acetyltransferase.
       0.499
Caci_1383
KEGG: saq:Sare_4550 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.463
Caci_1376
PFAM: Helix-turn-helix type 11 domain protein; regulatory protein DeoR; KEGG: fre:Franean1_1647 helix-turn-helix type 11 domain-containing protein.
       0.433
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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