STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1450PFAM: Antibiotic biosynthesis monooxygenase; globin; KEGG: sma:SAV_3316 hypothetical protein. (252 aa)    
Predicted Functional Partners:
Caci_8210
Hypothetical protein; KEGG: sco:SCO4548 integral membrane protein.
  
     0.581
Caci_2241
PFAM: Extracellular ligand-binding receptor; KEGG: scl:sce9122 putative binding-protein- dependent transport protein.
  
     0.556
Caci_1451
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: sgr:SGR_3670 putative DNA-damage-inducible protein F.
  
    0.516
Caci_0693
PFAM: protein of unknown function DUF214; KEGG: fal:FRAAL5378 putative ABC transport system integral membrane protein.
 
     0.510
Caci_6124
KEGG: mlo:mll3824 hypothetical protein.
  
     0.489
Caci_2762
Hypothetical protein; KEGG: gur:Gura_1273 DsbA oxidoreductase.
 
  
 0.459
Caci_7650
KEGG: msm:MSMEG_2897 hypothetical protein.
  
     0.429
Caci_6121
KEGG: mjl:Mjls_2137 hypothetical protein.
 
     0.428
Caci_3441
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: sme:SMc03253 putative L-proline 3-hydroxylase protein.
 
  
 0.426
Caci_3827
PFAM: MOSC domain containing protein; Oxidoreductase FAD-binding domain protein; ferredoxin; FAD- binding 9 siderophore-interacting domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: sus:Acid_3476 MOSC domain-containing protein.
  
    0.426
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.