STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1528PFAM: Peptidase M23; KEGG: tfu:Tfu_0675 hypothetical protein. (139 aa)    
Predicted Functional Partners:
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: sma:SAV_2627 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
     
 0.603
Caci_6100
PFAM: protein of unknown function YGGT; KEGG: tfu:Tfu_1117 hypothetical protein.
 
     0.564
disA
Protein of unknown function DUF147; Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c-di-AMP likely acts as a signaling molecule that may couple DNA integrity with a cellular process.
     
 0.541
Caci_1520
KEGG: ace:Acel_1553 hypothetical protein.
 
     0.538
tsf
Translation elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
       0.505
Caci_0008
KEGG: sma:SAV_4323 hypothetical protein.
 
     0.501
Caci_0202
PFAM: Septum formation initiator; KEGG: sma:SAV_3532 hypothetical protein.
 
     0.477
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.474
Caci_2243
KEGG: sgr:SGR_5585 hypothetical protein.
  
     0.467
frr
Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
  
    0.449
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.