STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1535PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV_1586 PadR-like family transcriptional regulator. (183 aa)    
Predicted Functional Partners:
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.773
Caci_1537
KEGG: sgr:SGR_5778 hypothetical protein.
       0.661
Caci_1534
PFAM: alpha/beta hydrolase fold protein; KEGG: sma:SAV_1585 hypothetical protein.
 
     0.651
Caci_9035
PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3682 hypothetical protein.
 
   
 0.558
Caci_1837
PFAM: beta-lactamase domain protein; KEGG: sus:Acid_0861 beta-lactamase domain- containing protein.
  
    0.540
Caci_0347
TIGRFAM: inositol 1-phosphate synthase; PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: sco:SCO3899 hypothetical protein.
     
 0.500
Caci_8006
PFAM: OsmC family protein; KEGG: sen:SACE_2118 OsmC-like protein.
 
     0.485
Caci_2047
PFAM: regulatory protein TetR; KEGG: sen:SACE_4839 TetR family transcriptional regulator.
  
     0.476
Caci_1538
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: fre:Franean1_2363 putative NADH-flavin reductase-like protein.
       0.463
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.