STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1558PFAM: Domain of unknown function DUF1918; KEGG: sen:SACE_6639 hypothetical protein. (73 aa)    
Predicted Functional Partners:
Caci_1559
KEGG: sma:SAV_5801 hypothetical protein.
       0.665
Caci_1560
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: sma:SAV_5802 thiol-specific antioxidant protein.
       0.658
Caci_8859
PFAM: membrane-bound metal-dependent hydrolase; KEGG: nfa:nfa29510 hypothetical protein.
 
     0.647
Caci_4182
PFAM: protein of unknown function DUF742; KEGG: nfa:nfa23530 hypothetical protein.
  
     0.590
Caci_1557
2-oxo-acid dehydrogenase E1 subunit, homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
       0.528
Caci_1062
PFAM: protein of unknown function DUF742; KEGG: sma:SAV_1631 hypothetical protein.
  
     0.506
Caci_7241
KEGG: sma:SAV_3901 hypothetical protein.
  
     0.495
Caci_1561
KEGG: fre:Franean1_1865 hypothetical protein.
       0.483
Caci_2532
PFAM: protein of unknown function DUF742; KEGG: fra:Francci3_4332 hypothetical protein.
  
     0.421
Caci_1210
KEGG: sco:SCO5366 ATP synthase protein I.
  
     0.419
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.