STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1573PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_6561 acetyltransferase. (172 aa)    
Predicted Functional Partners:
Caci_2536
PFAM: FAD dependent oxidoreductase; KEGG: fre:Franean1_1878 FAD dependent oxidoreductase.
  
     0.600
Caci_5939
PFAM: histidine triad (HIT) protein; KEGG: fal:FRAAL1400 hypothetical protein.
 
     0.542
Caci_2241
PFAM: Extracellular ligand-binding receptor; KEGG: scl:sce9122 putative binding-protein- dependent transport protein.
  
     0.479
Caci_2715
PFAM: FAD dependent oxidoreductase; KEGG: sen:SACE_2961 fructosyl-amino acid oxidase, putative.
  
     0.474
Caci_1572
KEGG: sco:SCO2103 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.
  
    0.450
Caci_8703
KEGG: fre:Franean1_4815 hypothetical protein.
  
     0.448
argG
KEGG: sco:SCO7036 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
  
  
 0.439
Caci_5702
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sgr:SGR_5483 putative glutamate synthase (NADPH) large subunit.
     
 0.436
Caci_7206
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bmc:BAbS19_II07150 cupin domain protein.
 
     0.416
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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