STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1604Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: syf:Synpcc7942_2418 transcriptional regulator. (293 aa)    
Predicted Functional Partners:
Caci_3307
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO4482 LysR family transcriptional regulator.
  
     0.770
Caci_5765
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sco:SCO4482 LysR family transcriptional regulator.
  
     0.770
Caci_3215
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: msm:MSMEG_1799 transcriptional regulator.
  
     0.769
Caci_5862
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: sen:SACE_4009 LysR family transcriptional regulator.
  
     0.768
Caci_7477
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: nfa:nfa29660 putative transcriptional regulator.
  
     0.767
Caci_5081
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bbr:BB3316 LysR family transcriptional regulator.
  
     0.763
Caci_1233
PFAM: regulatory protein LysR; KEGG: cmi:CMM_1522 LysR family transcriptional regulator.
  
     0.754
Caci_1447
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO3773 LysR family transcriptional regulator.
  
     0.754
Caci_1770
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: sco:SCO2734 LysR family transcriptional regulator.
  
     0.747
Caci_6221
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: fal:FRAAL3649 LysR family transcriptional regulator.
  
     0.737
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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