STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1650PFAM: protein of unknown function DUF58; KEGG: sgr:SGR_5410 hypothetical protein. (463 aa)    
Predicted Functional Partners:
Caci_1649
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: sgr:SGR_5409 hypothetical protein.
  
 0.932
Caci_1651
PFAM: ATPase associated with various cellular activities AAA_3; AAA ATPase central domain protein; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; KEGG: sgr:SGR_5411 putative regulatory protein.
  
 0.888
Caci_3833
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: fre:Franean1_3804 transglutaminase domain- containing protein.
 
  
 0.789
Caci_8517
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: stp:Strop_2914 transglutaminase domain- containing protein.
 
  
 0.783
Caci_8515
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: fre:Franean1_0634 ATPase.
  
 0.561
Caci_2217
PFAM: sporulation and cell division protein SsgA; KEGG: sgr:SGR_5997 putative SsgB protein.
  
     0.511
Caci_2399
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sma:SAV_6861 DNA-binding protein.
  
     0.506
Caci_3835
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: sen:SACE_5869 methanol dehydrogenase regulatory protein.
  
 0.497
Caci_3076
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: rha:RHA1_ro04527 magnesium chelatase.
  
 0.450
Caci_2377
Hypothetical protein; KEGG: fra:Francci3_3215 putative secreted protein.
  
     0.445
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.