STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1663Hypothetical protein. (331 aa)    
Predicted Functional Partners:
Caci_5272
1-phosphofructokinase; KEGG: fre:Franean1_7074 ribokinase-like domain- containing protein; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.604
Caci_5907
1-phosphofructokinase; KEGG: sen:SACE_6317 tagatose-6-phosphate kinase; TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.604
Caci_1662
PFAM: regulatory protein TetR; KEGG: sgr:SGR_3980 TetR family transcriptional regulator.
       0.552
Caci_2672
KEGG: sco:SCO4821 hypothetical protein.
    
 0.543
Caci_1664
TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: sco:SCO2161 hypothetical protein; Belongs to the HesB/IscA family.
       0.468
Caci_5839
PFAM: Ribose/galactose isomerase; KEGG: sco:SCO1224 sugar-phosphate isomerase.
  
  
 0.407
Caci_7302
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sgr:SGR_4915 putative ribose-5-phosphate isomerase.
  
  
 0.407
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.