STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1691KEGG: sma:SAV_5932 hypothetical protein. (70 aa)    
Predicted Functional Partners:
map-2
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.685
Caci_1882
PFAM: protein of unknown function DUF1707; KEGG: rha:RHA1_ro00266 hypothetical protein.
  
     0.604
Caci_0958
PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_4651 hypothetical protein.
  
     0.564
Caci_9037
KEGG: sma:SAV_4300 hypothetical protein.
  
     0.554
Caci_0051
KEGG: sco:SCO3555 integral membrane protein.
  
     0.539
Caci_4375
Hypothetical protein; KEGG: sco:SCO1084 thioredoxin.
  
     0.488
Caci_2201
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4868 lipoprotein.
  
     0.483
Caci_0808
KEGG: sma:SAV_2707 hypothetical protein.
  
     0.450
Caci_8245
KEGG: sco:SCO4165 hypothetical protein.
  
     0.427
Caci_7763
KEGG: sgr:SGR_2365 hypothetical protein.
  
     0.409
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.