STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1715PFAM: glycoside hydrolase family 38; KEGG: rxy:Rxyl_0070 glycoside hydrolase, family 38. (1002 aa)    
Predicted Functional Partners:
Caci_1716
PFAM: oxidoreductase domain protein; KEGG: mlo:mlr2436 NADH-dependent dyhydrogenase.
 
    0.902
Caci_1718
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: tpe:Tpen_1431 phosphotransferase domain- containing protein.
 
     0.889
Caci_1722
PFAM: extracellular solute-binding protein family 1; KEGG: cmi:CMM_1262 putative sugar ABC transporter, substrate binding protein.
 
     0.867
Caci_1721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gtn:GTNG_1822 putative integral membrane transport protein.
 
     0.850
Caci_1720
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsa:RSal33209_0424 sugar ABC transporter, permease component.
 
     0.846
Caci_1346
KEGG: stp:Strop_1435 hypothetical protein.
 
    0.649
Caci_1719
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA0975 sugar ABC transporter, ATP- binding protein.
 
     0.642
Caci_1717
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: ace:Acel_1816 xylose isomerase domain- containing protein.
 
     0.633
Caci_1723
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: kra:Krad_4060 GntR family transcriptional regulator.
       0.483
Caci_7349
PFAM: glycoside hydrolase family 4; KEGG: sgr:SGR_4870 putative sugar hydrolase.
 
   
 0.424
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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