STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1746TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: ace:Acel_1441 phenylacetate-CoA oxygenase, PaaI subunit. (256 aa)    
Predicted Functional Partners:
Caci_1745
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: sma:SAV_4353 phenylacetate-CoA oxygenase subunit PaaB.
 
 0.999
Caci_1744
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: sma:SAV_4354 phenylacetate-CoA oxygenase subunit PaaA.
  
  0.998
Caci_1747
PFAM: protein of unknown function DUF59; KEGG: sen:SACE_3547 phenylacetic acid degradation protein.
 
 
 0.995
Caci_1748
PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: stp:Strop_4069 phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 0.994
Caci_4483
TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: saq:Sare_2696 phenylacetic acid degradation protein PaaD.
 
 
 0.984
Caci_6182
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.976
Caci_3322
KEGG: stp:Strop_1038 hypothetical protein.
 
 
 0.960
Caci_3669
KEGG: xfa:XF1916 coenzyme F390 synthetase.
 
 
 0.951
Caci_7944
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV_3120 enoyl-CoA hydratase/isomerase.
 
 
 0.933
Caci_8753
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sgr:SGR_3040 putative enoyl-CoA hydratase.
  
 
 0.915
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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