STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1793PFAM: protein of unknown function DUF427; KEGG: fal:FRAAL4754 hypothetical protein. (265 aa)    
Predicted Functional Partners:
Caci_1794
PFAM: Threonyl/alanyl tRNA synthetase SAD; KEGG: rxy:Rxyl_2571 Ala-tRNA(Pro) hydrolase.
       0.773
Caci_6582
KEGG: fre:Franean1_2552 hypothetical protein.
  
     0.612
Caci_6571
KEGG: fre:Franean1_2552 hypothetical protein.
  
     0.554
Caci_1795
PFAM: Heavy metal transport/detoxification protein; KEGG: fal:FRAAL0988 putative regulator.
       0.547
Caci_1796
KEGG: fal:FRAAL3586 hypothetical protein.
       0.547
Caci_5274
PFAM: alpha-L-rhamnosidase; Amylo-alpha-16- glucosidase; KEGG: hypothetical protein.
  
     0.512
Caci_3881
Hypothetical protein; KEGG: npu:Npun_BR095 metallophosphoesterase.
  
     0.489
Caci_2607
KEGG: fra:Francci3_3458 hypothetical protein.
  
     0.413
Caci_3593
KEGG: fal:FRAAL3174 hypothetical protein.
 
     0.412
Caci_8396
KEGG: fre:Franean1_6684 hypothetical protein.
  
     0.409
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.