STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1850KEGG: mab:MAB_0256c hypothetical protein. (540 aa)    
Predicted Functional Partners:
Caci_8725
PFAM: protein of unknown function DUF1212; KEGG: sgr:SGR_4082 hypothetical protein.
  
  
 0.879
Caci_1851
TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: sgr:SGR_4734 putative transport protein.
 
    0.636
Caci_6600
PFAM: amino acid permease-associated region; KEGG: bmc:BAbS19_II07980 amino acid/polyamine transporter, family I.
 
     0.569
Caci_5573
KEGG: swp:swp_0828 hypothetical protein.
  
     0.561
Caci_3173
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rha:RHA1_ro07099 hypothetical protein.
  
     0.536
Caci_6603
PFAM: peptidase M24; KEGG: sma:SAV_2161 peptidase.
 
     0.506
Caci_2163
PFAM: von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: sgr:SGR_4863 hypothetical protein.
 
     0.491
Caci_6594
KEGG: sgr:SGR_5155 putative integral membrane protein.
  
     0.470
Caci_2164
PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: sgr:SGR_4862 hypothetical protein.
 
     0.456
Caci_6607
KEGG: sma:SAV_1927 integral membrane protein.
  
     0.446
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.