Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Caci_1855 | Caci_1856 | Hypothetical protein; KEGG: gme:Gmet_2113 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | 0.651 |
Caci_1855 | Caci_1857 | Hypothetical protein; KEGG: gme:Gmet_2113 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | 0.428 |
Caci_1856 | Caci_1855 | PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | Hypothetical protein; KEGG: gme:Gmet_2113 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | 0.651 |
Caci_1856 | Caci_1857 | PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | 0.497 |
Caci_1857 | Caci_1855 | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | Hypothetical protein; KEGG: gme:Gmet_2113 pyridoxamine 5'-phosphate oxidase-related, FMN-binding protein. | 0.428 |
Caci_1857 | Caci_1856 | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | PFAM: 4'-phosphopantetheinyl transferase; KEGG: sen:SACE_4001 phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | 0.497 |
Caci_1857 | Caci_1858 | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | KEGG: sgr:SGR_5340 putative integral membrane protein. | 0.639 |
Caci_1857 | Caci_1860 | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | KEGG: fre:Franean1_2533 hypothetical protein. | 0.432 |
Caci_1858 | Caci_1857 | KEGG: sgr:SGR_5340 putative integral membrane protein. | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | 0.639 |
Caci_1858 | Caci_1860 | KEGG: sgr:SGR_5340 putative integral membrane protein. | KEGG: fre:Franean1_2533 hypothetical protein. | 0.676 |
Caci_1860 | Caci_1857 | KEGG: fre:Franean1_2533 hypothetical protein. | PFAM: aldo/keto reductase; KEGG: stp:Strop_3310 aldo/keto reductase. | 0.432 |
Caci_1860 | Caci_1858 | KEGG: fre:Franean1_2533 hypothetical protein. | KEGG: sgr:SGR_5340 putative integral membrane protein. | 0.676 |