STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1860KEGG: fre:Franean1_2533 hypothetical protein. (92 aa)    
Predicted Functional Partners:
Caci_1859
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sgr:SGR_5341 putative phage shock protein A.
 
     0.953
Caci_1862
KEGG: ace:Acel_0953 hypothetical protein.
 
     0.865
Caci_1435
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: sgr:SGR_5341 putative phage shock protein A.
 
     0.801
Caci_0808
KEGG: sma:SAV_2707 hypothetical protein.
  
     0.769
Caci_0710
PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_2480 hypothetical protein.
  
     0.749
Caci_6158
PFAM: protein of unknown function DUF1707; KEGG: sma:SAV_3217 hypothetical protein.
  
     0.737
Caci_5716
PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_411 hypothetical protein.
  
     0.728
Caci_8839
PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_411 hypothetical protein.
  
     0.719
Caci_1801
PFAM: protein of unknown function DUF1707; KEGG: sma:SAV_5183 hypothetical protein.
  
     0.702
Caci_0958
PFAM: protein of unknown function DUF1707; KEGG: sgr:SGR_4651 hypothetical protein.
  
     0.682
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.