Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Caci_1908PFAM: protein of unknown function DUF1470; KEGG: fre:Franean1_2325 hypothetical protein. (208 aa)    
Predicted Functional Partners:
Caci_8439
PFAM: protein of unknown function DUF1470; KEGG: stp:Strop_1541 hypothetical protein.
  
     0.752
Caci_2397
PFAM: protein of unknown function DUF1470; KEGG: cmi:CMM_0540 hypothetical protein.
 
     0.714
Caci_1076
PFAM: protein of unknown function DUF1470; KEGG: mgi:Mflv_4849 hypothetical protein.
  
     0.601
Caci_1909
PFAM: major facilitator superfamily MFS_1; KEGG: fre:Franean1_2326 major facilitator transporter.
       0.555
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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